Bioinformatics PhD Student and Data Scientist
Biotechnology | Greater San Diego Area, US
Double majored in Biological Engineering and Mathematics at MIT. Worked as a Bioinformatics technician at the Broad Institute in Cambridge, MA. Earned MS in Bionformatics from UC-Santa Cruz in 9 months (instead of usual two years). Joined Prof. Gene Yeo's laboratory to work on single-cell mRNA-seq transcriptomic analyses, focusing on alternative splicing and RNA binding proteins.
Research interests: single-cell sequencing, genomics, transcriptomics.
Specialties: Cluster computing (PBS, SGE), Hidden markov models (HMMs), Gene Set Enrichment Analysis (GSEA), machine-learning algorithms, information theory, image analysis, graph theory, newtork analysis, clustering, dimensionality reduction.
Programming Languages: Python/BioPython, C, Java, Perl, R/Bioconductor, MATLAB, bash, and LaTeX.
Graphic Design: Adobe Illustrator, OmniGraffle Pro.